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Nonextensive statistical mechanics applied to protein folding problem: kinetics aspects
Protein folding problem Stereo-chemical model Monte Carlo simulation q-Gaussian Protein folding time
2010/7/5
The study focuses mainly kinetic aspects of the folding problem related with the protein folding time, represented in this work by the concept of first passage time (FPT). Many distinct proteins, whos...
Quasi-physical Algorithm for Protein Folding in an Off-Lattice Model
quasi-physical algorithm conjugate gradient method protein folding off-lattice
model
2007/8/15
2007Vol.47No.1pp.181-185DOI:
Quasi-physical Algorithm for Protein Folding in an Off-Lattice Model
LÜ Zhi-Peng,1 HUANG Wen-Qi,1 and SHI He2
1 School of Computer Scie...
All-Atom Protein-Folding Simulations in Generalized-Ensembles
All-Atom Protein-Folding Simulations Generalized-Ensembles
2010/10/19
We review the generalized-ensemble approach to protein studies. Focusing on the problem of secondary structure formation, we show that these sophisticated techniques allow efficient simulations of all...
The Water Factor in the Protein-Folding Problem
The Water Factor the Protein-Folding Problem
2010/10/18
Globular proteins are produced as a linear chain of aminoacids in water solution in the cell and, in the same aqueous environment, fold into their respective unique and functional native structures. I...