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Complete Mitochondrial Genome Sequences of Chinese Indigenous Sheep with Different Tail Types and an Analysis of Phylogenetic Evolution in Domestic Sheep
Mitochondrial DNA Mitogenome Sheep Phylogenetic Mitochondrial Control Region
2016/5/20
China has a long history of sheep (Ovis aries [O. aries]) breeding and an abundance of sheep genetic resources. Knowledge of the complete O. aries mitogenome should facilitate the study of the evoluti...
Genetic Diversity and Phylogenetic Analysis of South-East Asian Duck Populations Based on the mtDNA D-loop Sequences
Duck Populations D-loop Region Haplotype Mitochondrial DNA Phylogeny
2016/12/28
The maternally inherited mitochondrial DNA (mtDNA) D–loop region is widely used for exploring genetic relationships and for investigating the origin of various animal species. Currently, domestic duck...
Molecular Phylogenetic Diversity and Spatial Distribution of Bacterial Communities in Cooling Stage during Swine Manure Composting
Diversity Restriction Fragment Length Polymorphism
2016/5/18
Polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) and subsequent sub-cloning and sequencing were used in this study to analyze the molecular phylogenetic diversity and spat...
A Genetic Analysis of Taoyuan Pig and Its Phylogenetic Relationship to Eurasian Pig Breeds
Microsatellite Marker Mitochondrial DNA Phylogeny Taoyuan Pig
2016/5/18
Taoyuan pig is a native Taiwan breed. According to the historical record, the breed was first introduced to Taiwan from Guangdong province, Southern China, around 1877. The breed played an important r...
A Molecular Phylogenetic Assessment of Pseudendoclonium
taxonomy green algae Molecular Phylogenetic Assessment
2015/1/6
ABSTRACT A MOLECULAR PHYLOGENETIC ASSESSMENT OF PSEUDENDOCLONIUM SEPTEMBER 2007 RICHARD F. MULLINS JR., B.S., UNIVERSITY OF MASSACHUSETTS AMHERST Directed by: Professor Daniel R. Cooley Pseudendocloni...
A Phylogenetic Analysis of Armored Scale Insects, Based Upon Nuclear, Mitochondrial, and Endosymbiont Gene Sequences
Diaspididae Coccoidea evolution
2015/1/4
Armored scale insects (Hemiptera: Diaspididae) are among the most invasive insects in the world. They have unusual genetic systems, including diverse types of paternal genome elimination (PGE) and par...
Genetic Variation and Phylogenetic Relationships of Indian Buffaloes of Uttar Pradesh
Buffalo Mitochondrial DNA D-loop Region Neutrality Test Phylogenetic Analysis
2016/5/12
India possesses a total buffalo population of 105 million out of which 26.1% inhabit Uttar Pradesh. The buffalo of Uttar Pradesh are described as nondescript or local buffaloes. Currently, there is no...
mtDNA Diversity and Phylogenetic State of Korean Cattle Breed, Chikso
Phylogenetic Analysis Chikso Haplotype mtDNA Cytochrome
2016/5/11
In order to analyze the genetic diversity and phylogenetic status of the Korean Chikso breed, we determined sequences of mtDNA cytochrome b (cyt b) gene and performed phylogenetic analysis using 239 i...
Phylogenetic Analysis of a Privately-owned Korean Native Chicken Population Using mtDNA D-loop Variations
D-loop Variation Haplotype Korean Native Chicken mtDNA
2016/5/11
The use of Korean native chicken is increasing, and the discovery of new genetic resources is very important from both economic and genetic conservation points of view. In this study, mtDNA D-loop seq...
Low-parameter phylogenetic estimation under the general Markov model
Markov invariants phylogenetic invariants base-composition rate-variation quartets supertrees
2012/5/2
In their 2008 and 2009 papers, Sumner and colleagues introduced the "squangles" - a small set of Markov invariants for phylogenetic quartets. The squangles are consistent with the general Markov model...
What use are Exponential Weights for flexi-Weighted Least Squares Phylogenetic Trees?
Exponential Weights flexi-Weighted Least Squares Phylogenetic Trees
2011/1/5
The method of flexi-Weighted Least Squares on evolutionary trees uses simple polynomial or exponential functions of the evolutionary distance in place of model-based variances. This has the advantage ...
The algebra of the general Markov model on phylogenetic trees and networks
general Markov model phylogenetic trees
2011/1/5
It is known that the Kimura 3ST model of sequence evolution on phylogenetic trees can be extended quite naturally to arbitrary split systems. However, this extension relies heavily on mathematical pec...
Tales of Tools and Trees: Phylogenetic analysis and explanation in evolutionary archaeology
Phylogenetic analysis Evolutionary archaeology Technology
2011/9/5
In this paper, I study the application of phylogenetic analysis in evolutionary archaeology. I show how transfer of this apparently general analytic tool is affected by salient differences in discipli...
The morphology ofYujiangolepis liujingensis (Placodermi, Arthrodira) from the Pragian of Guangxi (south China) and its phylogenetic significance
Actinolepidoidei Early Devonian palaeobiogeography phylogeny
2014/3/26
The morphology of the arthrodire placoderm Yujiangolepis liujingensis Wang, Pan & Wang, 1998, from the Lower
Devonian of Guangxi is redescribed, and compared to that of the basal arthrodires Antarcta...
Inference of phylogenetic relationships among key angiosperm lineages using a compatibility method on a molecular data set
angiosperm Ceratophyllum character analysis Chloranthaceae compatibility eudicots magnoliids monocots phylogenetic method phylogeny
2009/7/27
Phylogenetic relationships among the five key angiosperm lineages, Ceratophyllum, Chloranthaceae, eudicots, magnoliids, and monocots, have resisted resolution despite several large-scale analyses samp...