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Dispersion of swimming algae in laminar and turbulent channel flows: theory and simulations
algae swimming microorganisms Taylor dispersion DNS turbulent transport bioreactors
2012/5/31
Algal swimming is often biased by environmental cues, e.g. gravitational and viscous torques drive cells towards downwelling fluid (gyrotaxis). In view of biotechnological applications, it is importan...
Regularizing binding energy distributions and thermodynamics of hydration. Application to water modeled with classical and ab initio simulations
potential distribution theorem hydration free energy hybrid Monte Carlo vapor-liquid equilibrium
2011/8/5
Abstract: The high-energy tail of the distribution of solute-solvent interaction energies is poorly characterized for condensed systems, but this tail region is of principal interest in determining th...
3-D Numerical Simulations of Biofilm Flows
Biofilm Cahn-Hilliard equation phase filed finite difference method multiphase flow
2014/5/28
We study the biofilm-flow interaction resulting in biofilm growth and deformation in a water channel in a 3-D setting using the phase field model developed recently [28, 29]. In this biofilm model, th...
Exploring the Energy Landscapes of Protein Folding Simulations with Bayesian Computation
Exploring Energy Landscapes Protein Folding Simulations Bayesian Computation
2010/11/15
Nested sampling is a technique developed to explore probability distributions localised in an exponentially small area of the parameter space. The algorithm provides both posterior samples and an est...
Molecuar Dynamics Simulations of Urea and Thermal-induced Denaturation of S-peptide Analogue
2007/7/28
专著信息
书名
Molecuar Dynamics Simulations of Urea and Thermal-induced Denaturation of S-peptide Analogue
语种
英文
撰写或编译
作者
Zhiyong Zhang,Yongjin Zhu,Yunyu Shi
第一作者单位
出版社
Biophysical Chemistry, 89,145-162,200...
UC San Diego Supercomputer Simulations May Pinpoint Causes of Parkinson’s, Alzheimer’s Diseases
Supercomputer Parkinson’s disease Alzheimer’s disease
2007/3/26
March 19, 2007，Using the massive computer-simulation power of the San Diego Supercomputer Center (SDSC) at UC San Diego, researchers are zeroing in on the causes of Parkinson’s disease, Alzheimer’s di...
Usage of Enzyme Substrate to Protect the Activities of Cellulase, Protease and a-Amylase in Simulations of Monogastric Animal and Avian Sequential Total Tract Digestion
Enzyme Substrate Activity Protection Cellulase Protease Amylase
2016/4/21
Cellulase from Aspergillus niger, (??amylase from Bacillus sp. and protease from Bacillus globigii were used as enzyme sources in this study to examine how their respective substrates protect them in ...