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Macroscopic loop formation in circular DNA denaturation
Macroscopic loop formation circular DNA denaturation Biomolecules Statistical Mechanics
2012/5/3
The statistical mechanics of DNA denaturation under fixed linking number is qualitatively different from that of the unconstrained DNA. Quantitatively different melting scenarios are reached from two ...
Generation of a flexible loop structural ensemble and its application to induced-fit structural changes following ligand binding
docking simulation flexible loop modeling force-biased multicanonical molecular dynamics induced-fit structural ensemble
2010/12/2
Molecular recognition is often mediated by flexible loops that have widely fluctuating structures and are sometimes disordered, but that form particular complex structures following ligand binding. In...